Tools V3 .2.zip
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A full list of the different tools are provided below. Please see thedocumentation for their different usage. For example, sigma clipping,which is common way to estimate the background of an image, can beperformed with the sigma_clip() function. Bydefault, the function returns a masked array where outliers aremasked:
New to our screenshot annotation toolset is Magnify. This nifty new tool creates a resizable circular area that magnifies everything within it and can be freely repositioned. Zoom into multiple areas of interest within your screenshots, assigning each magnified area a different-colored border.
The new update comes packed with a number of other smaller additions and under-the-hood tweaks aimed at elevating user experience, including Arrow and Rectangle annotation tools for the Screen Recorder, a close button under the webcam overlay that lets you quickly remove it from screen recordings, and the option to log in to the desktop apps with a Microsoft account, among others.
openshift3/ose-ansible:v3.11.346-2openshift3/ose-descheduler:v3.11.346-2openshift3/ose-node-problem-detector:v3.11.346-2openshift3/ose-cluster-monitoring-operator:v3.11.346-2openshift3/csi-attacher:v3.11.346-2openshift3/csi-livenessprobe:v3.11.346-2openshift3/ose-efs-provisioner:v3.11.346-2openshift3/prometheus-alertmanager:v3.11.346-2openshift3/prometheus:v3.11.346-2openshift3/image-inspector:v3.11.346-2openshift3/jenkins-agent-nodejs-10-rhel7:v3.11.346-2openshift3/jenkins-slave-base-rhel7:v3.11.346-2openshift3/ose-kube-state-metrics:v3.11.346-2openshift3/ose-logging-curator5:v3.11.346-2openshift3/ose-logging-eventrouter:v3.11.346-2openshift3/ose-logging-kibana5:v3.11.346-2openshift3/metrics-hawkular-metrics:v3.11.346-2openshift3/metrics-heapster:v3.11.346-2openshift3/apb-base:v3.11.346-2openshift3/ose-ansible-service-broker:v3.11.346-2openshift3/ose-cli:v3.11.346-2openshift3/ose-console:v3.11.346-2openshift3/ose-deployer:v3.11.346-2openshift3/ose-egress-router:v3.11.346-2openshift3/ose-hyperkube:v3.11.346-2openshift3/ose-keepalived-ipfailover:v3.11.346-2openshift3/mediawiki-apb:v3.11.346-2openshift3/mysql-apb:v3.11.346-2openshift3/ose-pod:v3.11.346-2openshift3/ose-recycler:v3.11.346-2openshift3/ose-service-catalog:v3.11.346-2openshift3/jenkins-2-rhel7:v3.11.346-2openshift3/manila-provisioner:v3.11.346-2openshift3/ose-web-console:v3.11.346-2openshift3/kuryr-controller:v3.11.346-2openshift3/ose-prometheus-config-reloader:v3.11.346-3openshift3/registry-console:v3.11.346-2openshift3/snapshot-provisioner:v3.11.346-2openshift3/ose-cluster-autoscaler:v3.11.346-2openshift3/ose-metrics-server:v3.11.346-2openshift3/automation-broker-apb:v3.11.346-2openshift3/ose-configmap-reloader:v3.11.346-2openshift3/csi-driver-registrar:v3.11.346-2openshift3/csi-provisioner:v3.11.346-2openshift3/oauth-proxy:v3.11.346-2openshift3/prometheus-node-exporter:v3.11.346-2openshift3/grafana:v3.11.346-2openshift3/jenkins-agent-maven-35-rhel7:v3.11.346-2openshift3/jenkins-agent-nodejs-12-rhel7:v3.11.346-2openshift3/ose-kube-rbac-proxy:v3.11.346-2openshift3/kuryr-cni:v3.11.346-3openshift3/ose-logging-elasticsearch5:v3.11.346-2openshift3/logging-fluentd:v3.11.346-2openshift3/metrics-cassandra:v3.11.346-2openshift3/metrics-hawkular-openshift-agent:v3.11.346-2openshift3/metrics-schema-installer:v3.11.346-2openshift3/apb-tools:v3.11.346-2openshift3/ose-docker-builder:v3.11.346-2openshift3/ose-cluster-capacity:v3.11.346-2openshift3/ose:v3.11.346-2openshift3/ose-egress-dns-proxy:v3.11.346-2openshift3/ose-haproxy-router:v3.11.346-2openshift3/ose-hypershift:v3.11.346-2openshift3/mariadb-apb:v3.11.346-2openshift3/mediawiki:v3.11.346-2openshift3/node:v3.11.346-2openshift3/postgresql-apb:v3.11.346-2openshift3/ose-docker-registry:v3.11.346-2openshift3/ose-tests:v3.11.346-2openshift3/local-storage-provisioner:v3.11.346-2openshift3/ose-operator-lifecycle-manager:v3.11.346-2openshift3/ose-egress-http-proxy:v3.11.346-2openshift3/ose-ovn-kubernetes:v3.11.346-2openshift3/ose-prometheus-operator:v3.11.346-3openshift3/snapshot-controller:v3.11.346-2openshift3/ose-template-service-broker:v3.11.346-2
SigProfiler provides a comprehensive and integrated suite of bioinformatic tools for performing mutational signature analysis. The software covers the analytical lifecycle starting with the generation of the mutational matrix and finishing with signature extraction, as well as supporting functionality for plotting and simulation.
Hover over any of the logos to learn more about each of our software tools, including the GitHub repository, a wiki page describing how to use the tool and the corresponding publication. All SigProfiler software is available both in Python and R environments.
Instructions for the current version of R can be found on the Rtools homepage. The authoritative source of information for tools to work with the current release of R is the\"R Administration and Installation\" manual. In particular, please read the\"Windows Toolset\" appendix.
Some of the tools are incompatible with obsolete versions of R.We maintain one actively updated version of the tools, and other \"frozen\" snapshotsof them. We recommend that users use the latest release of Rtools with the latest release of R.
The change history to the Rtools is below.Tools for 64 bit Windows buildsRtools 2.12 and later include both 32 bit and 64 bit tools.Most of the tools used for 32 bit builds work fine as well for 64 bit builds,but the gcc version may be different, and it has changed a number of times. R 3.3.0 and later use a toolchain based on gcc 4.9.3 and mingw-w64 v3, puttogether by Jeroen Ooms and others. See the project page for details. R-patched subsequent to Jan 22, 2012, R-devel, and releases after 2.14.1 used a toolchain based on pre-4.6.3 gcc, put together by Prof. Brian Ripley and available as multi.zip on his web page. Rtools 2.15 to 3.3 includes this toolchain. It uses the same gcc version for both 32 and 64 bit builds. Separate versions of the gdbdebugger are also included for each archtecture.Builds of R 2.13.x and R 2.14.{0,1} used a release based on pre-4.5.2 gcc. Rtools 2.14 includesbinaries put together by Prof. Brian Ripley and available from his web page. To install these, select the \"MinGW64\" component when installing Rtools.For the later R 2.11.x versions, we used the MinGW-w64version based on pre-4.4.4 gcc from Prof. Ripley, which is no longer available.We also used this version for development builds of R 2.12.0 up to July 20.R 2.11.0 used -w64/files/Toolchains%20targetting%20Win64/Automated%20Builds/mingw-w64-1.0-bin_i686-mingw_20100322.zip, but this is apparently no longer availablefor download.To install any of these older versions, follow the instructions on Prof. Ripley's web page.DownloadsThere are a number of downloads described in the \"Windows Toolset\" appendix.
After running the Rtools installer, follow the instructions in Rtools.txtto complete your installation.Special situationsObtaining the R source codeThere are two ways to obtain the R source code: from the Subversion repository, and from CRAN in acompressed tar file.
We have updated Tcl/TK to version 8.6.4. If you are using Rtools34to build R 3.3.x, you will need to change TCL_VERSION = 85toTCL_VERSION = 86in R_HOME/src/gnuwin32/fixed/etc/Makeconf.
Both the gcc 4.6.3 toolchain and a toolchain based on gcc 4.9.3 and mingw-w64 v3 are now included. For use with the newer toolchaina compiled copy of libicu55 is also included; it will be installed in Rtools/mingw_libsif the newer compilers are selected.Changes since R 3.1.3The version number has been updated to 3.3.x.y.
Rtools33 has been started. Due to test failures with gcc 4.9.2, it will not be usedin R 3.2.0, and gcc 4.6.3 is included in Rtools33. We expect that gcc 4.9.2 or laterwill be included in a future release.
The 32 and 64 bit builds of the gdb debugger have been copied into the Rtools/bindirectory as gdb.exe and gdb64.exe respectively. The copies in the gcc-4.6.3 remain, butwill not be included when that compiler is dropped.
R version 3.2.0 will require texinfo 5.2 to build the manuals, and it has been added to the tools.It will also require a copy of Perl, which is NOT includedin the tools. By default the manuals will no longer be built; follow the instructionsin src/gnuwin32/MkRules.dist if you would like to build them.
The Cygwin tools have been updated to versions current as ofNovember 19, 2013. Cygwin now builds separate 32 bit and 64 bitversions; we include 32 bit versions of the tools. If your system only has 64bit Cygwin DLLs installed, you will need to add our Cygwin DLLs to your path(or install the 32 bit Cygwin DLLs into Cygwin).
The version number has been updated to 3.1.x.y.We now record the minimum supported R version in the registry data in entry \"MinRVersion\"within the Rtools/X.Y key. Earlier versions of R should use an earlier version of Rtools. This valuemay be less than the minimum listed in the table above. The table is a promise to try to maintaincompatibility; this value is what we actually maintained.We also record the full version number, e.g. 3.1.0.1935, in entry \"FullVersion\" in the registry.Changes since R 2.15.2The bitmap libraries have been updated to libpng 1.5.13, libtiff 4.0.3 and jpeg-9.The version number has been changed from 2.16.x to 3.0.x, following the R renumbering.Changes since R 2.15.1The bitmap libraries have been updated to jpeg-8d, libpng 1.5.12, and libtiff 4.0.2.The Cygwin tools have been updated to versions current as of July 13, 2012. NB: some of thetools now require you to have a HOME environment variable, listing your homedirectory. One way you can create it in a Windows command shell is by usingset HOME=%USERPROFILE%Rtools 2.15 has been frozen.Changes since R 2.14.1The pre-4.6.3 toolchain has been updated to fix a bug in the sqrt() function.R now uses pre-4.6.3 gcc for all current builds, and that is the only version included in Rtools 2.15.Changes since R 2.14.0The new toolchain based on gcc pre-4.5.4 has been added.Changes since R 2.13.1The Info-zip utilities have been updated: zip.exe is now version 3.0, unzip.exe is version 6.00.Rtools 2.13 has been frozen.Changes since R 2.12.2We have updated all of the tools to current Cygwin versions as of March 25, 2011. We addedthe \"du\" utility from Cygwin. We have dropped Vanilla Perl.The libjpeg version has been updated to 8c, and libpng has been updated to 1.5.1.Rtools 2.12 has been frozen.We have added the Rtools version number to Rtools.txt and to a new file, VERSION.txt.Changes since R 2.11.1Prior to October 18, 2010, builds of Rtools212.exe did not correctly install the \"extras\" required to build R. Version 2.12.0.1892 or later should fix this.We have now updated all of the tools to current Cygwin versions, and haveupdated the compilers, and included the 64 bit compilers into Rtools. SeeProf. Ripley's pagefor the details. Perl is rarely needed in R since R 2.12.0, so it is by defaultnot installed.Rtools 2.11 has been frozen.Changes since R 2.11.0The 32 bit version of R-devel (to become R 2.12.0 in fall, 2010) will be built with gcc 4.5.x, so Rtools212 contains a completelynew MinGW toolchain based on gcc 4.5.0. Current plans are to continue building R 2.11.x and patches toit with Rtools211, based on gcc 4.2.1.Changes since R 2.10.1Rtools210 was frozen, and Rtools211 has been introduced containing the following changes: 153554b96e
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